The immune system hunts "foreign proteins". That is, the immune system has tolerance for proteins it has seen in your body, and attacks any cell making anything else. This is why it's very difficult to find transplant donors, as your immune system will recognize that an organ coming from someone else has proteins that didn't come from you. Here, the immune system presumes that unusual proteins probably came from a virus, and in this case it happens to be right. Unfortunately, the immune system may, in response, kill off the very cells we just finished curing.

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